Compute autocorrelation function — block

This function allows calculation of an autocorrelation function (ACF) for a dataset with multiple independent units (for example, data from several individuals, data from multiple dives by an individual animal, etc.). The groups (individual, dive, etc.) should be coded in a categorical variable. The function calculates correlation coefficients over all levels of the categorical variable, but respecting divisions between levels (for example, individual animals are kept separate).

block_acf(resids, blocks, max_lag, make_plot = TRUE, ...)

Arguments

resids	The variable for which the ACF is to be computed (often a vector of residuals from a fitted model)
blocks	A categorical variable indicating the groupings (must be the same length as resids. ACF will be computed only for data points within the same block.)
max_lag	ACF will be computed at 0-max_lag lags, ignoring all observations that span blocks. Defaults to the minimum number of observations in any block. The function will allow you to specify a max_lag longer than the shortest block if you so choose.
make_plot	Logical. Should a plot be produced? Defaults to TRUE.
...	Additional arguments to be passed to plot.acf

Examples

block_acf(
  resids = ChickWeight$weight,
  blocks = ChickWeight$Chick
)